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Plant intron-splicing efficiency database

WebNov 9, 2024 · A highly pronounced decrease in the splicing efficiency of nad5 intron 4 as well a weaker reduction for nad2 intron 1 splicing could be detected in ul18-l1 plants (Fig. 4C). A global overexpression of other premature and mature mitochondrial messenger RNAs (mRNAs) was also detected in the mutant (SI Appendix, Fig. S5 A and B). WebNov 18, 2024 · Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice, and soybean from ∼57,000 public RNA-seq …

Plant Intron Splicing Efficiency Database (PISE): exploring …

WebSep 1, 2024 · containing introns capable of splicing. From the clones correctly expressing zeocin resistance protein 250 intron variants were extracted for further verification of splicing efficiency and capability to enhance gene expression. The generated introns were sequenced. And as a result of this sequencing it was found that only 12 introns WebSep 25, 2024 · Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice, and soybean from ∼57,000 public RNA-seq libraries. Zhang H , Jia J , Zhai J Sci China Life Sci, 66 (3):602-611, 18 Nov 2024 Cited by: 0 articles PMID: 36409390 jesus sucre lvbp https://askerova-bc.com

Plant Intron-Splicing Efficiency Database(PISES), …

WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice and soybean from ∼57,000 public RNA-seq … WebWelcome to Plant Splicing Efficiency Database(PISE), an online database for exploring 25,000+ Arabidopsis, 3,000+ soybean, 19,000+ rice, 17,000+ maize public RNA-Seq … WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice and soybean from ∼57,000 public RNA-seq libraries bioRxiv Skip to main content Home Submit FAQ Blog ALERTS / RSS About Channels Advanced Search bioRxiv posts many COVID19-related papers. jesus suarez canedo

Plant Public RNA‐seq Database: a comprehensive online database for

Category:Introns in higher plant genes SpringerLink

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Plant intron-splicing efficiency database

ERISdb: a database of plant splice sites and splicing signals.

WebThen they move on, leaving behind a specific intron sequence flanked by splicing sites, which splits the coding DNA into two exons. This process can be repeated on a massive scale throughout a genome. In fungi, for example, introners appear to account for most of the intron gain during at least the last 100,000 years. WebBuilding a comprehensive database for plant intron- splicing efficiency Our database is a collection of over 57,000 public next- generation sequencing (NGS) RNA-seq libraries and the given pipeline for each plant was used to analyze intron- …

Plant intron-splicing efficiency database

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WebNov 18, 2024 · Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice, and soybean from ∼57,000 public RNA-seq libraries November 2024 DOI:... WebAug 1, 2024 · Online tools for extracting intron information and intercepting intron sequences were retrieved and obtained. PID will become a fundamental comprehensive database for plant intron research and greatly facilitate further investigation of the distribution, length characteristics and splicing properties of introns. 2.

WebPlant IntronRatio database, Zhailab@SUSTech ( Rice (10,710 libraries) Plant Intron Splicing Efficiency Database Search gene intron ratio levels from Rice public RNA-Seq libraries All … WebEnter the email address you signed up with and we'll email you a reset link.

WebNov 22, 2024 · Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice, and soybean from ∼57,000 public RNA-seq … WebJun 1, 2024 · Here, we established the first-ever large-scale splicing efficiency database to date in any organism. Our database includes more than 57,000 plant public RNA-seq libraries, including 25,283 from Arabidopsis, 17,789 from maize, 10,710 from rice, and 3,974 from soybean, and in total covers more than 1.6 million introns in these four species.

WebPlant Intron Splicing Efficiency Database (PISE): exploring splicing of ~1,650,000 introns in Arabidopsis, maize, rice and soybean from ~57,000 public RNA-seq libraries Preprint Full …

WebA large-scale analysis of splice sites in eight plant species is performed, using novel algorithms and tools developed by the authors, and putative intronic and exonic cis-regulatory motifs, U12 introns as well as splicing sites in 45 microRNA genes in five plant species are identified. Splicing is one of the major contributors to observed … lampu h4 laserjesus sucreWebDec 9, 2024 · Moreover, the splicing efficiency of nad1 introns 1 and 4 and nad4 intron 1 significantly decreased in dek55 compared with the wild type (WT). These results indicate that DEK55 plays a crucial role in RNA editing at multiple sites as well as in the splicing of nad1 and nad4 introns. jesus strikes back 2WebFeb 28, 2024 · These partially complemented mutants have a dramatic decrease in the splicing efficiency of six mitochondrial introns, five of which are located in nad transcripts, which encode subunits of Complex I. Our data show that the assembly of complex I is seriously compromised as a result of the defective splicing. jesus sucre mlbWebPlant Intron-Splicing Efficiency Database (PISES), Zhailab@SUSTech, Jixian Zhai. An overview of PISE. Welcome to Plant Splicing Efficiency Database (PISE), an online … jesus suda sangreWebSep 16, 2024 · RT-PCR analysis showed that the intron 2 was spliced equally in the wild-type and the complemented plants (Fig. S2), indicating that Emp32 is required for the splicing of nad7 intron 2. Then we detected whether over-expression of Emp32 increases the splicing efficiency of nad7 intron 2 in over-expression plants. jesus submission to godWebMar 28, 2024 · Differential splicing efficiency of specific introns is a mechanism that dramatically increases protein diversity, based on selection of alternative exons for the … jesus sucre licey